#!/bin/bash
set -e

pkg=norsp

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  # Double quote below to expand the temporary directory variable now versus
  # later is on purpose.
  # shellcheck disable=SC2064
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

gunzip -r *
#do_stuff_to_test_package#
norsp -fileSeq query.fasta -fileHssp query.hssp -filePhd query.prof -filePhdHtm query.phdHtm -fileCoils query.coils -o output.nors
diff -u output.nors query.nors
diff -u output.nors_sum query.sumNors
echo 'PASSED'
