954d83c064d2bee383be5bbb1249b962 *DESCRIPTION
b1650c31789cbee325ce160a27f757b8 *NAMESPACE
5a1d7061f74b9d5b07241900ab871586 *NEWS.md
3b24f0075baedcefab509b43b41e5e7a *R/check_cdt_samples_convergence.R
972ecd7f8ace2aa8f1d44eb564142293 *R/coarse2estim.R
9f26c5394e70e25ff6cc80a2ddea53d3 *R/compatibility.R
0f80dc60d80f5622191080bf2bf80de9 *R/data.R
405ac7be8e674a490e4727736735ccce *R/discr_si.R
4a8bcc2d0ad7f4c8ccb6b2ccb6378c29 *R/estimate_R_plots.R
bf3efc114e43a4211dbf5dec02316725 *R/estimate_r.R
d6790e30733d099d2e9b9374e8271f92 *R/init_mcmc_params.R
4a6437cd0b49b85758e9fc4fde965728 *R/make_config.R
12daf717fc1bed73b5845b8175757594 *R/make_mcmc_control.R
98db6b7107d2193f9b31a87cc91b3f0d *R/overall_infectivity.R
e24c69322a5a60c3bd561ce2a24c32c0 *R/plot.R
832e706f03a47b7ac65d5530e509f691 *R/sample_posterior_R.R
21c2a8d2099185199660b11f8aabe480 *R/utilities.R
5def011107f47e74a96a10d2fbfe70a0 *R/wallinga_teunis.R
ff884e3c9bd6f4c50f2d83e38b2e469a *README.md
da05f01e884f91e743dcddd5c0077add *build/vignette.rds
66c60e1f898f2416e5256a1008d4042f *data/Flu1918.rda
9f74237e7f178ca4b7876c9d13d6632c *data/Flu2009.rda
857c2e8b70692ace281c4d3ecce27c26 *data/Measles1861.rda
ffe56571d6b1c74f4c764d11e3d3e806 *data/MockRotavirus.rda
f3ffb383738cc213be49dec2915b2684 *data/SARS2003.rda
e1476cd9438507a57d03d5dac76eef1c *data/Smallpox1972.rda
78c262e30fcb360a8b260155dfbf38ad *data/flu_2009_NYC_school.rda
2da2331dbb07ed211b566ac6f3e41291 *data/mers_2014_15.rda
8b8248bd5cbe4d9b64058452e063d822 *inst/doc/demo.R
cacfa7f09f1834f04103c88d3b06929e *inst/doc/demo.Rmd
8d2fb5272bd0c7da560344aba653a71d *inst/doc/demo.html
d8514c592ba489ff73e58a4a0fe3f788 *man/DiscrSI.Rd
bfbf85521c9d90ce87b40e6dd7e1e7cd *man/EstimateR.Rd
ee521e008b3487bf814a56ddc1458f6c *man/Flu1918.Rd
39b56e9d7fb9056999a87b09055ea1e1 *man/Flu2009.Rd
6e1d9e472f129177273ffcb5b0ccef9b *man/Measles1861.Rd
22303f106868562760636efddccbb15c *man/MockRotavirus.Rd
97013a37e46ee151c02c7a4efb1e7c7f *man/OverallInfectivity.Rd
7e7ce9c18ecb446d3fe071a9c82b67cd *man/SARS2003.Rd
9859bb617cb4706b21a0997b92cb9891 *man/Smallpox1972.Rd
c3c3770f524fa557622641404f655e40 *man/WT.Rd
8b6096bccc842b2eb13811a5e83026e1 *man/check_cdt_samples_convergence.Rd
0c83f68ac23726484e7dd8ec760ee7ec *man/coarse2estim.Rd
b846d3190c5a12d7e73b8a833eb8011f *man/discr_si.Rd
0a8ce85655fce282a2d3a43fd4b498c8 *man/estimate_R.Rd
c3d3275bd5c6e7e1efd03f8c7ef11ea0 *man/estimate_R_plots.Rd
36aa480c77e902ffbeda011985d2420d *man/flu_2009_NYC_school.Rd
b4c9f954c979650f73ba66d8150faac0 *man/init_mcmc_params.Rd
f6c07c99c4a919686b5adce9c14224d5 *man/make_config.Rd
3fd700621eaa5d240092cd64f1fed97d *man/make_mcmc_control.Rd
3953604f282dfe21b6a357f35f3ea6e6 *man/mers_2014_15.Rd
81edeb2cdad738c694d7354d75c146b4 *man/overall_infectivity.Rd
f4939a683154dbc242eb85dabc7cbf00 *man/plot.estimate_R.Rd
1f9f6f9a50bd32b43b083027f9821924 *man/sample_posterior_R.Rd
6b4becf5216c47d721e926806b6bf264 *man/wallinga_teunis.Rd
eaceb3bd4a052bd751b8759964ff81b8 *tests/expected_output/Example1.rda
792ea0449633af1b80a94facc00aee52 *tests/expected_output/Example2.rda
1e59d486678904c12f24406f5854fff2 *tests/expected_output/Example3.rda
d44df2163813d2fc0b35afddc2b3fa79 *tests/expected_output/Example4.rda
37455b724fc4126f1b8305cc5c05f444 *tests/figs/deps.txt
cf2c97cdc5251777f32bbb01750a22fd *tests/figs/flu2009-incidence-import.svg
dc9beab62f0271e6307c80c0a96975fd *tests/figs/flu2009-instantaneous-no-legend.svg
6db16f7c86d4779e4246bddd15056cf4 *tests/figs/flu2009-rc.svg
db56ef6bc628a7299d73d292db1ff495 *tests/figs/flu2009-ri.svg
a4cc253cd0d848eb65a142cc94578348 *tests/figs/flu2009-si.svg
911a6159d25e5e8bae3715ba48c31328 *tests/testthat.R
a75bad01e96068da54b2c418bb813a00 *tests/testthat/test-estimate_R.R
e0348a554a8c976703bac70266b01480 *tests/testthat/test-plot.R
a6a04245f0486340c0bf82e675f62c17 *tests/testthat/test-stample_posterior_R.R
cacfa7f09f1834f04103c88d3b06929e *vignettes/demo.Rmd
