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scipy.cluster.vq.

# whiten

scipy.cluster.vq.whiten(obs, check_finite=None)

  Normalize a group of observations on a per feature basis.

  Before running k-means, it is beneficial to rescale each feature dimension of the observation set by its standard deviation (i.e. “whiten” it - as in “white noise” where each frequency has equal power). Each feature is divided by its standard deviation across all observations to give it unit variance.

  Parameters:
    obs ndarray

      Each row of the array is an observation. The columns are the features seen during each observation:

          #        f0  f1  f2
          obs = [[ 1., 1., 1.],  #o0
                 [ 2., 2., 2.],  #o1
                 [ 3., 3., 3.],  #o2
                 [ 4., 4., 4.]]  #o3

    check_finite bool, optional

      Whether to check that the input matrices contain only finite numbers. Disabling may give a performance gain, but may result in problems (crashes, non-termination) if the inputs do contain infinities or NaNs. Default: True for eager backends and False for lazy ones.

  Returns:
    result ndarray

      Contains the values in obs scaled by the standard deviation of each column.

  Notes

  `whiten` has experimental support for Python Array API Standard compatible backends in addition to NumPy. Please consider testing these features by setting an environment variable `SCIPY_ARRAY_API=1` and providing CuPy, PyTorch, JAX, or Dask arrays as array arguments. The following combinations of backend and device (or other capability) are supported.

  Library | CPU | GPU
  --- | --- | ---
  NumPy | ✅ | n/a
  CuPy | n/a | ✅
  PyTorch | ✅ | ✅
  JAX | ✅ | ✅
  Dask | ✅ | n/a

  See Support for the array API standard for more information.

  Examples

      >>> import numpy as np
      >>> from scipy.cluster.vq import whiten
      >>> features  = np.array([[1.9, 2.3, 1.7],
      ...                       [1.5, 2.5, 2.2],
      ...                       [0.8, 0.6, 1.7,]])
      >>> whiten(features)
      array([[ 4.17944278,  2.69811351,  7.21248917],
             [ 3.29956009,  2.93273208,  9.33380951],
             [ 1.75976538,  0.7038557 ,  7.21248917]])